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Summary</jats:title><jats:p>We designed a PyQt graphical user interface – Sequanix – aiming at democratizing the use of Snakemake pipelines. Although the primary goal of Sequanix was to facilitate the execution of NGS Snakemake pipelines available in the Sequana project (<jats:ext-link xmlns:xlink="http://www.w3.org/1999/xlink" ext-link-type="uri" xlink:href="http://sequana.readthedocs.io">http://sequana.readthedocs.io</jats:ext-link>), it can also handle any Snakemake pipelines. Therefore, Sequanix should be useful to all Snakemake developers willing to expose their pipelines to a wider audience.</jats:p></jats:sec><jats:sec><jats:title>Availability</jats:title><jats:p>Source code available on <jats:ext-link xmlns:xlink="http://www.w3.org/1999/xlink" ext-link-type="uri" xlink:href="http://github.com/sequana/sequana">http://github.com/sequana/sequana</jats:ext-link> and standalone on <jats:ext-link xmlns:xlink="http://www.w3.org/1999/xlink" ext-link-type="uri" xlink:href="http://bioconda.github.io">http://bioconda.github.io</jats:ext-link> (sequana package).</jats:p></jats:sec
Document type: Article
The different versions of the original document can be found in:
DOIS: 10.1093/bioinformatics/bty034 10.1101/162701
Published on 01/01/2018
Volume 2018, 2018
DOI: 10.1093/bioinformatics/bty034
Licence: Other
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